HsaEX6051106 @ hg19
Exon Skipping
Gene
ENSG00000067992 | PDK3
Description
pyruvate dehydrogenase kinase, isozyme 3 [Source:HGNC Symbol;Acc:8811]
Coordinates
chrX:24546193-24552542:+
Coord C1 exon
chrX:24546193-24546303
Coord A exon
chrX:24549774-24549887
Coord C2 exon
chrX:24552046-24552542
Length
114 bp
Sequences
Splice sites
3' ss Seq
TAATTTTCTTTTCTCAATAGGCT
3' ss Score
9.63
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
ATCAGTGACCTAGGTGGTGGTGTCCCACTTCGAAAAATAGATCGTCTTTTTAACTACATGTATTCTACTGCTCCTAGACCCAGCCTGGAGCCTACCAGAGCTGCCCCTTTG
Seq A exon
GCTGGATTTGGTTATGGTTTGCCAATTTCCCGTCTGTATGCTAGATATTTTCAAGGAGATCTGAAACTGTATTCCATGGAAGGAGTGGGTACTGATGCTGTCATTTATTTGAAG
Seq C2 exon
GCTCTTTCAAGTGAGTCATTTGAGAGACTTCCAGTTTTTAATAAGTCCGCATGGCGCCATTACAAGACCACGCCTGAAGCCGATGATTGGAGCAATCCCAGCAGTGAACCCAGGGATGCTTCAAAATACAAAGCAAAACAGTAATATACCACCTTGATTTCCATTACAAAGTATCTGATTTGTCTGAATAAAGGTGTCCCACTCACTGTTCCAGGAATTCTTGCAGTGTAGAGGTATTCACAACAGCAAGCAGGGATTTGGCCTGCCATCAATTTTATTTAAAAAGCAATTAAGTTTGCAGTTTGTCCTCATAAACGTTGTAGGTTGAAACTGAAAAATAAGTTAAAATGATCAATCAAGATAAAAGGTGATCTATCCATCCAATGGAATATTATTTGGCCTTAAAAAGGAAGGACATTCTGATATGTGCTGCAACATGGGTGAATCTTGAAGTCATTATGCTAAGTGAAATAAACCAGACATAAAAGGACAAATAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000067992-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.441
Domain overlap (PFAM):
C1:
PF0251821=HATPase_c=FE(28.6=100)
A:
PF0251821=HATPase_c=FE(29.4=100)
C2:
PF0251821=HATPase_c=PD(0.8=2.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTACCAGAGCTGCCCCTTT
R:
ACACTGCAAGAATTCCTGGAACA
Band lengths:
250-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)