RnoEX0064570 @ rn6
Exon Skipping
Gene
ENSRNOG00000012513 | Pdk3
Description
pyruvate dehydrogenase kinase 3 [Source:RGD Symbol;Acc:1593276]
Coordinates
chrX:62840281-62852830:-
Coord C1 exon
chrX:62852720-62852830
Coord A exon
chrX:62848339-62848452
Coord C2 exon
chrX:62840281-62840420
Length
114 bp
Sequences
Splice sites
3' ss Seq
TAATTTTCTTTTCTTAATAGGCT
3' ss Score
8.78
5' ss Seq
AAGGTACTA
5' ss Score
7.52
Exon sequences
Seq C1 exon
ATAAGTGACCTAGGTGGTGGAGTCCCACTTCGAAAAATAGACCGTCTTTTTAACTACATGTACTCAACTGCTCCTCGTCCCAGCCTGGAGCCCACAAGAGCTGCTCCCTTG
Seq A exon
GCTGGATTTGGTTATGGCTTGCCAATTTCTCGACTGTATGCCAGATATTTTCAGGGAGATCTAAAACTGTATTCCATGGAAGGAGTGGGTACCGATGCTGTCATTTATTTGAAG
Seq C2 exon
GCCCTTTCAAGTGAATCCTTTGAGAGGCTGCCAGTTTTCAATAAGTCTGCATGGCGCCATTACAAGACCACTCCTGAAGCTGATGACTGGAGCAATCCCAGCAGCGAACCAAGGGATGCATCAAAATACAAGGCTAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012513-'13-17,'13-16,14-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.404
Domain overlap (PFAM):
C1:
PF0251821=HATPase_c=FE(28.6=100)
A:
PF0251821=HATPase_c=FE(29.4=100)
C2:
PF0251821=HATPase_c=PD(0.8=2.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTAGGTGGTGGAGTCCCA
R:
TGTTTAGCCTTGTATTTTGATGCA
Band lengths:
243-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]