MmuEX0034269 @ mm9
Exon Skipping
Gene
ENSMUSG00000035232 | Pdk3
Description
pyruvate dehydrogenase kinase, isoenzyme 3 [Source:MGI Symbol;Acc:MGI:2384308]
Coordinates
chrX:91014228-91026916:-
Coord C1 exon
chrX:91026806-91026916
Coord A exon
chrX:91022648-91022761
Coord C2 exon
chrX:91014228-91014367
Length
114 bp
Sequences
Splice sites
3' ss Seq
TCATTTTCTTTTCTTAATAGGCT
3' ss Score
10.14
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
ATAAGTGACCTAGGTGGTGGAGTCCCACTTCGAAAAATAGACCGTCTTTTTAACTACATGTACTCAACTGCTCCTCGTCCCAGCCTGGAGCCTACAAGAGCGGCGCCCTTG
Seq A exon
GCTGGATTTGGTTATGGCTTGCCAATTTCTCGTCTGTATGCCAGATATTTTCAGGGAGATCTAAAACTGTATTCCATGGAAGGAGTGGGTACCGATGCAGTCATTTATTTGAAG
Seq C2 exon
GCCCTTTCAAGTGAATCCTTTGAGAGGCTGCCAGTTTTCAATAAGTCTGCATGGCGCCATTACAAGACCACTCCTGAAGCTGATGACTGGAGCAATCCCAGCAGTGAACCAAGGGATGCATCAAAATACAAGGCTAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035232_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.404
Domain overlap (PFAM):
C1:
PF0251821=HATPase_c=FE(28.6=100)
A:
PF0251821=HATPase_c=FE(29.4=100)
C2:
PF0251821=HATPase_c=PD(0.8=2.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTAGGTGGTGGAGTCCCA
R:
TGTTTAGCCTTGTATTTTGATGCA
Band lengths:
243-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: