GgaEX6010236 @ galGal3
Exon Skipping
Gene
ENSGALG00000005400 | CACNA2D3
Description
NA
Coordinates
chr12:7754524-7810667:+
Coord C1 exon
chr12:7754524-7754613
Coord A exon
chr12:7758574-7758687
Coord C2 exon
chr12:7810589-7810667
Length
114 bp
Sequences
Splice sites
3' ss Seq
ATGAACTTTTCCTTTCACAGTTC
3' ss Score
9.36
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
CATTTTAGGGAACACCTTGACAAGCTTTTTGCAAAAGGAATTGGAATGCTGGACATTGCTTTAAATGAAGCTTTCAACATGCTCAATGAA
Seq A exon
TTCAATCACACAGGACAAGGAAGTATTTGCAGCCAAGCCATAATGTTGATTACTGATGGAGCTGTGGACACATATGACACAATATTTGCAAAATATAATTGGCCAGACAGAAAA
Seq C2 exon
GTTCGTATTTTCACCTATCTGATTGGAAGAGAAGCTGCTTTTGCTGACAACTTGAAATGGATGGCCTGTGCTAACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005400-'8-9,'8-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF135191=VWA_2=FE(16.1=100)
A:
PF135191=VWA_2=FE(20.6=100)
C2:
PF135191=VWA_2=FE(14.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAACACCTTGACAAGCTTT
R:
CTTTGTTAGCACAGGCCATCCA
Band lengths:
162-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]