MmuEX6040208 @ mm10
Exon Skipping
Gene
ENSMUSG00000021991 | Cacna2d3
Description
calcium channel, voltage-dependent, alpha2/delta subunit 3 [Source:MGI Symbol;Acc:MGI:1338890]
Coordinates
chr14:29183563-29300826:-
Coord C1 exon
chr14:29300737-29300826
Coord A exon
chr14:29293065-29293178
Coord C2 exon
chr14:29183563-29183641
Length
114 bp
Sequences
Splice sites
3' ss Seq
TTAAATATTTCTTCCCACAGTTC
3' ss Score
9.43
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
CACTTCAGGGAGCATTTGGACAAACTTTTTGCCAAAGGGATTGGAATGCTGGATATCGCACTGAACGAGGCCTTCAACATACTGAGCGAT
Seq A exon
TTCAACCACACTGGACAAGGAAGCATTTGCAGCCAGGCCATCATGCTCATAACTGATGGGGCAGTGGACACCTATGATACCATCTTTGCAAAATATAATTGGCCAGACCGAAAG
Seq C2 exon
GTTCGAATCTTTACTTACCTCATTGGACGGGAGGCTGCTTTTGCCGACAATCTCAAGTGGATGGCTTGTGCTAACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021991-'23-37,'23-29,25-37=AN
Average complexity
A_C3
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF135191=VWA_2=FE(16.1=100)
A:
PF135191=VWA_2=FE(20.6=100)
C2:
PF135191=VWA_2=FE(14.4=100)
Main Skipping Isoform:
ENSMUST00000022567fB6897
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTTACCATGGAGGCAGAG
R:
AGCACAAGCCATCCACTTGAG
Band lengths:
162-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types