RnoEX0016119 @ rn6
Exon Skipping
Gene
ENSRNOG00000031287 | Cacna2d3
Description
calcium voltage-gated channel auxiliary subunit alpha2delta 3 [Source:RGD Symbol;Acc:631361]
Coordinates
chr16:5247392-5363230:-
Coord C1 exon
chr16:5363141-5363230
Coord A exon
chr16:5355866-5355979
Coord C2 exon
chr16:5247392-5247470
Length
114 bp
Sequences
Splice sites
3' ss Seq
TTAAACATCTCTTCCCACAGTTC
3' ss Score
9.44
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
CACTTCAGGGAGCATTTGGACAAACTTTTTGCCAAAGGGATTGGAATGCTCGATATTGCGCTGAACGAGGCCTTCAATGTACTGAGCGAT
Seq A exon
TTCAACCACACCGGACAAGGAAGCATTTGCAGCCAGGCCATTATGCTCATAACCGACGGGGCAGTGGACACCTACGACACCATCTTTGCAAAGTACAATTGGCCAGAGCGAAAG
Seq C2 exon
GTTCGAATCTTCACTTACCTCATTGGACGAGAGGCTGCTTTTGCAGACAATCTCAAGTGGATGGCTTGTGCTAACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000031287-'14-21,'14-17,15-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF135191=VWA_2=FE(16.1=100)
A:
PF135191=VWA_2=FE(20.6=100)
C2:
PF135191=VWA_2=FE(14.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTTCAGGGAGCATTTGGACA
R:
AGCACAAGCCATCCACTTGAG
Band lengths:
162-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]