GgaEX6010240 @ galGal3
Exon Skipping
Gene
ENSGALG00000005400 | CACNA2D3
Description
NA
Coordinates
chr12:7714652-7736461:+
Coord C1 exon
chr12:7714652-7714820
Coord A exon
chr12:7734910-7735041
Coord C2 exon
chr12:7736401-7736461
Length
132 bp
Sequences
Splice sites
3' ss Seq
CAGTGTTTTTCCCTCCTCAGATC
3' ss Score
9.91
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
TTGCAGTATGAGTACTTCAATGCTGTGCTTATAAATGAAAGAGATGAAGAAGGGAACTATCTGGAGCTGGGAAAGGAGTTCATTCTAGTGCCGAACGACCACTTCAATAACTTGCCTGTAAATATCAGTCTGAGTGATGTCCAAGTACCAACTAATATGTATAATAAAG
Seq A exon
ATCCAGCCATTGTAAATGGAGTTTATTGGTCAGAATCCTTAAATAAGGTGTTTGTTGATAACTTTGATCGTGACCCTTCTCTCATCTGGCAGTACTTTGGAAGCGCAAAAGGATTTTTCAGACAGTATCCAG
Seq C2 exon
GAATTAAATGGGAACCTGATGAGAATGGAGTCATTGCATTTGACTGCAGAAATAGAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005400-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083996=VWA_N=PU(53.8=98.2)
A:
PF083996=VWA_N=FE(42.3=100)
C2:
PF083996=VWA_N=PD(2.9=14.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGTATGAGTACTTCAATGCTGT
R:
CATTTTCTATTTCTGCAGTCAAATGC
Band lengths:
229-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]