GgaEX6010240 @ galGal4
Exon Skipping
Gene
ENSGALG00000005400 | CACNA2D3
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 3 [Source:HGNC Symbol;Acc:HGNC:15460]
Coordinates
chr12:7475932-7497735:+
Coord C1 exon
chr12:7475932-7476094
Coord A exon
chr12:7496184-7496315
Coord C2 exon
chr12:7497675-7497735
Length
132 bp
Sequences
Splice sites
3' ss Seq
CAGTGTTTTTCCCTCCTCAGATC
3' ss Score
9.91
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
TATGAGTACTTCAATGCTGTGCTTATAAATGAAAGAGATGAAGAAGGGAACTATCTGGAGCTGGGAAAGGAGTTCATTCTAGTGCCGAACGACCACTTCAATAACTTGCCTGTAAATATCAGTCTGAGTGATGTCCAAGTACCAACTAATATGTATAATAAAG
Seq A exon
ATCCAGCCATTGTAAATGGAGTTTATTGGTCAGAATCCTTAAATAAGGTGTTTGTTGATAACTTTGATCGTGACCCTTCTCTCATCTGGCAGTACTTTGGAAGCGCAAAAGGATTTTTCAGACAGTATCCAG
Seq C2 exon
GAATTAAATGGGAACCTGATGAGAATGGAGTCATTGCATTTGACTGCAGAAATAGAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005400-'9-8,'9-7,10-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083996=VWA_N=FE(46.2=100)
A:
PF083996=VWA_N=FE(37.6=100)
C2:
PF083996=VWA_N=PD(2.6=14.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGTACTTCAATGCTGTGCT
R:
CATTTTCTATTTCTGCAGTCAAATGC
Band lengths:
222-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]