RnoEX0016131 @ rn6
Exon Skipping
Gene
ENSRNOG00000031287 | Cacna2d3
Description
calcium voltage-gated channel auxiliary subunit alpha2delta 3 [Source:RGD Symbol;Acc:631361]
Coordinates
chr16:5417860-5466086:-
Coord C1 exon
chr16:5465924-5466086
Coord A exon
chr16:5422280-5422411
Coord C2 exon
chr16:5417860-5417920
Length
132 bp
Sequences
Splice sites
3' ss Seq
TCTGTTCTTTTTCTTTTCAGATC
3' ss Score
13.29
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
TATGAATACTTCAATGCCGTGCTGATCAACGAGAGAGACAAAGATGGGAACTTTTTGGAATTGGGAAAGGAGTTCATCTTGGCCCCCAATGACCATTTTAATAATTTGCCTGTGAACATCAGTCTGAGTGATGTCCAAGTGCCAACGAACATGTACAACAAAG
Seq A exon
ATCCTGCCATAGTCAATGGAGTGTATTGGTCTGAATCTCTAAACAAAGTTTTTGTAGACAACTTCGATCGGGACCCGTCTCTTATATGGCAGTACTTTGGAAGTGCAAAGGGCTTTTTCAGACAGTACCCAG
Seq C2 exon
GGATTAAATGGGAACCAGACGAGAATGGAGTCATTGCCTTTGACTGCAGGAACAGGAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000031287-'9-13,'9-12,10-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083996=VWA_N=FE(46.2=100)
A:
PF083996=VWA_N=FE(37.6=100)
C2:
PF083996=VWA_N=PD(2.6=14.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAATACTTCAATGCCGTGCTGA
R:
TCCTGTTCCTGCAGTCAAAGG
Band lengths:
218-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]