GgaEX6010239 @ galGal4
Exon Skipping
Gene
ENSGALG00000005400 | CACNA2D3
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 3 [Source:HGNC Symbol;Acc:HGNC:15460]
Coordinates
chr12:7496184-7497974:+
Coord C1 exon
chr12:7496184-7496315
Coord A exon
chr12:7497675-7497735
Coord C2 exon
chr12:7497824-7497974
Length
61 bp
Sequences
Splice sites
3' ss Seq
TCATCTCTTTGTCTAAACAGGAA
3' ss Score
10.78
5' ss Seq
ATGGTAGGC
5' ss Score
7.42
Exon sequences
Seq C1 exon
ATCCAGCCATTGTAAATGGAGTTTATTGGTCAGAATCCTTAAATAAGGTGTTTGTTGATAACTTTGATCGTGACCCTTCTCTCATCTGGCAGTACTTTGGAAGCGCAAAAGGATTTTTCAGACAGTATCCAG
Seq A exon
GAATTAAATGGGAACCTGATGAGAATGGAGTCATTGCATTTGACTGCAGAAATAGAAAATG
Seq C2 exon
GTACATCCAAGCAGCAACTTCTCCAAAAGATGTGGTAATTTTAGTAGATGTCAGTGGCAGTATGAAAGGACTTCGCTTGACTATTGCTAAGCAGACAGTTTCATCTATTTTGGATACCCTTGGAGATGATGACTTCTTCAATATAATTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005400-'10-9,'10-8,11-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083996=VWA_N=FE(37.6=100)
A:
PF083996=VWA_N=PD(2.6=14.3)
C2:
PF135191=VWA_2=PU(22.2=78.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCTTCTCTCATCTGGCAGT
R:
GCGAAGTCCTTTCATACTGCCA
Band lengths:
136-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]