DreEX6092879 @ danRer10
Exon Skipping
Gene
ENSDARG00000078760 | cacna2d3
Description
calcium channel, voltage dependent, alpha2/delta subunit 3 [Source:ZFIN;Acc:ZDB-GENE-030616-133]
Coordinates
chr11:36480681-36481554:-
Coord C1 exon
chr11:36481423-36481554
Coord A exon
chr11:36481008-36481068
Coord C2 exon
chr11:36480681-36480831
Length
61 bp
Sequences
Splice sites
3' ss Seq
TACATTATGTGTGTTTTCAGGCG
3' ss Score
8.55
5' ss Seq
ATGGTATGA
5' ss Score
6.56
Exon sequences
Seq C1 exon
ATCCTGACATAGTCAATGGAGTTTACTGGTCGGAAGCCTTGAACAAAGTTTTCGTGGATAACTTCAGGAGAGACCCAACCCTCATCTGGCAGTACTTTGGAAGCGCTAAAGGTTTTTTCCGACAATACCCAG
Seq A exon
GCGTGAAATGGTATCCTGACGAACACGGCGTCATTGCATTTGATTGCAGAAACAGAAAATG
Seq C2 exon
GTATATCCAAGCAGCCACTTCACCTAAAGATGTTGTGATTCTAGTGGACGTCAGTGGCAGTATGAAGGGTTTAAGACTGACTATAGCCAGACAGACGGTTGCTTCAATACTGGACACACTCGGCGATGATGACTTCTTCAACATTATTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078760-'5-8,'5-7,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083996=VWA_N=FE(37.3=100)
A:
PF083996=VWA_N=PD(2.5=14.3)
C2:
PF137681=VWA_3=PU(24.7=80.4)
Main Skipping Isoform:
ENSDART00000002055fB1620
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGAGAGACCCAACCCTCAT
R:
CATACTGCCACTGACGTCCAC
Band lengths:
132-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]