BtaEX6094543 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013117 | CACNA2D3
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 3 [Source:HGNC Symbol;Acc:HGNC:15460]
Coordinates
chr22:46916607-46922778:-
Coord C1 exon
chr22:46922637-46922778
Coord A exon
chr22:46916852-46916912
Coord C2 exon
chr22:46916607-46916757
Length
61 bp
Sequences
Splice sites
3' ss Seq
TAACTCCATTTTTCTTCTAGGGA
3' ss Score
9.3
5' ss Seq
GTGGTAGGA
5' ss Score
4.71
Exon sequences
Seq C1 exon
TTTTCTCCAGATCCAGCAATTGTCAATGGAGTTTACTGGTCCGAATCCCTAAACAAAGTTTTTGTGGATAACTTTGATCGTGACCCAAGTCTCATATGGCAGTACTTTGGAAGTGCAAAGGGCTTTTTTAGGCAGTATCCAG
Seq A exon
GGATTAAATGGGAACCAGATGAGAATGGAGTCATTGCCTTTGACTGCAGGAACCGAAAGTG
Seq C2 exon
GTACATCCAGGCAGCGACTTCTCCAAAAGACGTGGTCATTTTAGTGGATGTCAGTGGCAGCATGAAAGGGCTCCGCATGACGATCGCAAAGCAAACAGTCTCGTCTATTTTGGATACGCTGGGGGATGACGACTTCTTCAACATAATTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013117-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083996=VWA_N=PU(92.2=97.9)
A:
PF083996=VWA_N=PD(5.9=14.3)
C2:
PF135191=VWA_2=PU(22.2=78.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTTGGAAGTGCAAAGGGCT
R:
ACGAGACTGTTTGCTTTGCGA
Band lengths:
143-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]