MmuEX0008822 @ mm9
Exon Skipping
Gene
ENSMUSG00000021991 | Cacna2d3
Description
calcium channel, voltage-dependent, alpha2/delta subunit 3 [Source:MGI Symbol;Acc:MGI:1338890]
Coordinates
chr14:30160067-30165129:-
Coord C1 exon
chr14:30164998-30165129
Coord A exon
chr14:30160308-30160368
Coord C2 exon
chr14:30160067-30160217
Length
61 bp
Sequences
Splice sites
3' ss Seq
TAAGCCCATTTTTCTTCTAGGGA
3' ss Score
7.94
5' ss Seq
ATGGTAGGC
5' ss Score
7.42
Exon sequences
Seq C1 exon
ATCCTGCCATTGTCAATGGAGTGTATTGGTCTGAATCTCTAAACAAAGTTTTTGTGGATAACTTTGATCGGGATCCGTCTCTCATATGGCAGTACTTTGGAAGTGCAAAGGGCTTTTTCAGACAGTACCCAG
Seq A exon
GGATTAAATGGGAACCAGATGAGAATGGAGTCATTGCCTTTGACTGCAGGAACAGAAAATG
Seq C2 exon
GTACATCCAGGCAGCGACTTCTCCAAAGGATGTTGTCATTTTGGTGGACGTCAGTGGGAGCATGAAAGGACTCCGCTTGACCATCGCCAAGCAAACAGTGTCCTCAATACTGGATACTCTGGGTGATGATGACTTCTTCAACATCATCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021991_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083996=VWA_N=FE(37.6=100)
A:
PF083996=VWA_N=PD(2.6=14.3)
C2:
PF135191=VWA_2=PU(22.2=78.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTTGGAAGTGCAAAGGGCT
R:
GACACTGTTTGCTTGGCGATG
Band lengths:
141-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: