RnoEX0016117 @ rn6
Exon Skipping
Gene
ENSRNOG00000031287 | Cacna2d3
Description
calcium voltage-gated channel auxiliary subunit alpha2delta 3 [Source:RGD Symbol;Acc:631361]
Coordinates
chr16:5417618-5422411:-
Coord C1 exon
chr16:5422280-5422411
Coord A exon
chr16:5417860-5417920
Coord C2 exon
chr16:5417618-5417768
Length
61 bp
Sequences
Splice sites
3' ss Seq
TAAGCCCATTTCTCTTCTAGGGA
3' ss Score
8.81
5' ss Seq
ATGGTAGGC
5' ss Score
7.42
Exon sequences
Seq C1 exon
ATCCTGCCATAGTCAATGGAGTGTATTGGTCTGAATCTCTAAACAAAGTTTTTGTAGACAACTTCGATCGGGACCCGTCTCTTATATGGCAGTACTTTGGAAGTGCAAAGGGCTTTTTCAGACAGTACCCAG
Seq A exon
GGATTAAATGGGAACCAGACGAGAATGGAGTCATTGCCTTTGACTGCAGGAACAGGAAATG
Seq C2 exon
GTACATCCAGGCAGCAACTTCTCCAAAGGATGTGGTCATTTTGGTGGACGTCAGCGGGAGCATGAAAGGACTCCGCCTGACCATCGCCAAGCAAACAGTCTCCTCGATACTGGACACCCTGGGCGATGATGACTTCTTCAACATCATCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000031287-'10-14,'10-13,11-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083996=VWA_N=FE(37.6=100)
A:
PF083996=VWA_N=PD(2.6=14.3)
C2:
PF135191=VWA_2=PU(22.2=78.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTTGGAAGTGCAAAGGGCT
R:
GGAGACTGTTTGCTTGGCGAT
Band lengths:
142-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]