GgaEX6010238 @ galGal4
Exon Skipping
Gene
ENSGALG00000005400 | CACNA2D3
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 3 [Source:HGNC Symbol;Acc:HGNC:15460]
Coordinates
chr12:7497675-7506246:+
Coord C1 exon
chr12:7497675-7497735
Coord A exon
chr12:7497824-7497974
Coord C2 exon
chr12:7506172-7506246
Length
151 bp
Sequences
Splice sites
3' ss Seq
TGTTTTGTCTTTCATATTAGGTA
3' ss Score
9.98
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
GAATTAAATGGGAACCTGATGAGAATGGAGTCATTGCATTTGACTGCAGAAATAGAAAATG
Seq A exon
GTACATCCAAGCAGCAACTTCTCCAAAAGATGTGGTAATTTTAGTAGATGTCAGTGGCAGTATGAAAGGACTTCGCTTGACTATTGCTAAGCAGACAGTTTCATCTATTTTGGATACCCTTGGAGATGATGACTTCTTCAATATAATTGCT
Seq C2 exon
TATAATGAAGAACTTCACTATGTAGAACCGTGTCTGAACGGAACATTGGTTCAAGCAGACAGAACCAACAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005400-'11-10,'11-9,12-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083996=VWA_N=PD(2.6=14.3)
A:
PF135191=VWA_2=PU(22.2=78.4)
C2:
PF135191=VWA_2=FE(13.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACCTGATGAGAATGGAGTCA
R:
TTGTTGGTTCTGTCTGCTTGA
Band lengths:
122-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]