BtaEX6094544 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013117 | CACNA2D3
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 3 [Source:HGNC Symbol;Acc:HGNC:15460]
Coordinates
chr22:46902047-46916912:-
Coord C1 exon
chr22:46916852-46916912
Coord A exon
chr22:46916607-46916757
Coord C2 exon
chr22:46902047-46902121
Length
151 bp
Sequences
Splice sites
3' ss Seq
TTAATTTTCCTCGGACACAGGTA
3' ss Score
7.57
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
GGATTAAATGGGAACCAGATGAGAATGGAGTCATTGCCTTTGACTGCAGGAACCGAAAGTG
Seq A exon
GTACATCCAGGCAGCGACTTCTCCAAAAGACGTGGTCATTTTAGTGGATGTCAGTGGCAGCATGAAAGGGCTCCGCATGACGATCGCAAAGCAAACAGTCTCGTCTATTTTGGATACGCTGGGGGATGACGACTTCTTCAACATAATTGCT
Seq C2 exon
TATAATGAGGAGCTTCACTACGTGGAACCTTGCCTGAATGGGACATTGGTGCAAGCTGACAGGACAAACAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013117-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083996=VWA_N=PD(5.9=14.3)
A:
PF135191=VWA_2=PU(22.2=78.4)
C2:
PF135191=VWA_2=FE(13.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACCAGATGAGAATGGAGTCA
R:
TTGTTTGTCCTGTCAGCTTGCA
Band lengths:
122-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]