MmuEX6040206 @ mm10
Exon Skipping
Gene
ENSMUSG00000021991 | Cacna2d3
Description
calcium channel, voltage-dependent, alpha2/delta subunit 3 [Source:MGI Symbol;Acc:MGI:1338890]
Coordinates
chr14:29333709-29347182:-
Coord C1 exon
chr14:29347122-29347182
Coord A exon
chr14:29346881-29347031
Coord C2 exon
chr14:29333709-29333783
Length
151 bp
Sequences
Splice sites
3' ss Seq
TTAATCTTCCCTCCACTTAGGTA
3' ss Score
10.16
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
GGATTAAATGGGAACCAGATGAGAATGGAGTCATTGCCTTTGACTGCAGGAACAGAAAATG
Seq A exon
GTACATCCAGGCAGCGACTTCTCCAAAGGATGTTGTCATTTTGGTGGACGTCAGTGGGAGCATGAAAGGACTCCGCTTGACCATCGCCAAGCAAACAGTGTCCTCAATACTGGATACTCTGGGTGATGATGACTTCTTCAACATCATCACG
Seq C2 exon
TATAACGAAGAGCTTCACTATGTGGAACCTTGTCTGAACGGAACACTGGTTCAAGCTGACAGGACCAACAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021991-'19-26,'19-25,20-26=AN
Average complexity
A_C3
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083996=VWA_N=PD(2.6=14.3)
A:
PF135191=VWA_2=PU(22.2=78.4)
C2:
PF135191=VWA_2=FE(13.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCAGGGTGAGCTTTGG
R:
GAAACACTGCCCAACAAGAGGA
Band lengths:
202-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types