RnoEX6054560 @ rn6
Exon Skipping
Gene
ENSRNOG00000031287 | Cacna2d3
Description
calcium voltage-gated channel auxiliary subunit alpha2delta 3 [Source:RGD Symbol;Acc:631361]
Coordinates
chr16:5407114-5417920:-
Coord C1 exon
chr16:5417860-5417920
Coord A exon
chr16:5417618-5417768
Coord C2 exon
chr16:5407114-5407188
Length
151 bp
Sequences
Splice sites
3' ss Seq
TTAATTTTCCCTCCTCTTAGGTA
3' ss Score
10.95
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
GGATTAAATGGGAACCAGACGAGAATGGAGTCATTGCCTTTGACTGCAGGAACAGGAAATG
Seq A exon
GTACATCCAGGCAGCAACTTCTCCAAAGGATGTGGTCATTTTGGTGGACGTCAGCGGGAGCATGAAAGGACTCCGCCTGACCATCGCCAAGCAAACAGTCTCCTCGATACTGGACACCCTGGGCGATGATGACTTCTTCAACATCATCACG
Seq C2 exon
TATAATGAAGAGCTTCACTATGTGGAACCTTGTCTGAATGGAACACTGGTTCAAGCGGACAGGACCAACAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000031287-'11-15,'11-14,12-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083996=VWA_N=PD(2.6=14.3)
A:
PF135191=VWA_2=PU(22.2=78.4)
C2:
PF135191=VWA_2=FE(13.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACCAGACGAGAATGGAGT
R:
CTTGTTGGTCCTGTCCGCTTG
Band lengths:
123-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]