GgaEX6010381 @ galGal4
Exon Skipping
Gene
ENSGALG00000005811 | COL7A1
Description
collagen, type VII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2214]
Coordinates
chr12:9079691-9080230:+
Coord C1 exon
chr12:9079691-9079726
Coord A exon
chr12:9080063-9080098
Coord C2 exon
chr12:9080186-9080230
Length
36 bp
Sequences
Splice sites
3' ss Seq
CATCTCTCCCTCCTTCCCAGGGC
3' ss Score
10.04
5' ss Seq
CCGGTAAGG
5' ss Score
10.19
Exon sequences
Seq C1 exon
GGCCCGCAGGGCTTTAGAGGGCCCCCTGGCCCCTCA
Seq A exon
GGCAATCAGGGAGAGCCAGGGCCACCAGGACCTCCG
Seq C2 exon
GGTGCTGCTGGCCCCCCGGGGAGCCAGGGTCCATCTGGGATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005811-'86-94,'86-93,88-94=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(17.7=100)
A:
PF0139113=Collagen=FE(17.7=100)
C2:
PF0139113=Collagen=FE(22.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCAGGGCTTTAGAGGGC
R:
CAGATGGACCCTGGCTCCC
Band lengths:
69-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]