DreEX6023298 @ danRer10
Exon Skipping
Gene
ENSDARG00000021720 | col7a1
Description
collagen, type VII, alpha 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2427]
Coordinates
chr6:40218408-40219031:-
Coord C1 exon
chr6:40218999-40219031
Coord A exon
chr6:40218810-40218872
Coord C2 exon
chr6:40218408-40218443
Length
63 bp
Sequences
Splice sites
3' ss Seq
TTTTCTCTTCATTTTTCAAGGGC
3' ss Score
8.36
5' ss Seq
ATAGTAAGA
5' ss Score
4.74
Exon sequences
Seq C1 exon
GGTGACCATGGAGAACCAGGCATTGGAGTTCAA
Seq A exon
GGCCCTCCTGGACCTCAGGGCAACAGAGGTTTACCTGGACCTGCAGGCACTCCAGGAGCCATA
Seq C2 exon
GGACCACAAGGACCTCAAGGGCTTCCAGGACAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000021720-'91-93,'91-92,92-93=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(12.7=72.7),PF0139113=Collagen=PU(5.2=27.3)
A:
PF0139113=Collagen=FE(25.6=100)
C2:
PF0139113=Collagen=FE(14.1=100),PF0139113=Collagen=PU(13.8=91.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]