MmuEX6069078 @ mm10
Exon Skipping
Gene
ENSMUSG00000025650 | Col7a1
Description
collagen, type VII, alpha 1 [Source:MGI Symbol;Acc:MGI:88462]
Coordinates
chr9:108974923-108975245:+
Coord C1 exon
chr9:108974923-108974955
Coord A exon
chr9:108975029-108975091
Coord C2 exon
chr9:108975210-108975245
Length
63 bp
Sequences
Splice sites
3' ss Seq
GTCCTGACTCCTCCTTCCAGGGT
3' ss Score
9.54
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
GGGGAGCCTGGAGAGACAGGACCTCCAGGACGG
Seq A exon
GGTCTGCCTGGACCTGTTGGAGCTGTGGGACTCCCTGGCCCTCCTGGCCCTTCCGGCCTCGTG
Seq C2 exon
GGTCCACAAGGCTCTCCAGGTTTGCCCGGACAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025650-'88-108,'88-103,95-108=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(15.9=100),PF0139113=Collagen=FE(13.9=100)
A:
PF0139113=Collagen=PD(0.1=0.0),PF0139113=Collagen=FE(27.8=100)
C2:
PF0139113=Collagen=FE(15.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGAGCCTGGAGAGACAG
R:
CACTTGTCCGGGCAAACCTG
Band lengths:
69-132
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types