GgaEX1016987 @ galGal3
Exon Skipping
Gene
ENSGALG00000005811 | COL7A1
Description
NA
Coordinates
chr12:9339208-9339533:+
Coord C1 exon
chr12:9339208-9339240
Coord A exon
chr12:9339350-9339412
Coord C2 exon
chr12:9339498-9339533
Length
63 bp
Sequences
Splice sites
3' ss Seq
CCCCGCTGTTACCCTTGCAGGGA
3' ss Score
10.87
5' ss Seq
GTGGTAGGT
5' ss Score
7.23
Exon sequences
Seq C1 exon
GGTGATCCAGGGGAACCTGGTGCCAGCATCCGG
Seq A exon
GGATTGCCTGGTCCCCAGGGCAGCATGGGGCTGCCTGGCCCCCCAGGACCCCCTGGTCTGGTG
Seq C2 exon
GGCCCACCGGGTGCACCTGGGCTGCCAGGACAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005811-'72-77,'72-76,73-77=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(12.1=72.7),PF0139113=Collagen=FE(12.7=100)
A:
PF0139113=Collagen=FE(25.3=100)
C2:
PF0139113=Collagen=FE(13.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACCTGGTGCCAGCATCC
R:
ACTTGTCCTGGCAGCCCA
Band lengths:
56-119
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]