BtaEX6095654 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019081 | COL7A1
Description
collagen, type VII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2214]
Coordinates
chr22:51880293-51880751:+
Coord C1 exon
chr22:51880293-51880328
Coord A exon
chr22:51880464-51880508
Coord C2 exon
chr22:51880719-51880751
Length
45 bp
Sequences
Splice sites
3' ss Seq
CCCTTGATATTTTTTTATAGGGT
3' ss Score
9.52
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GGCGGCCATGGAGACCCTGGACCACCCGGGGCCCCG
Seq A exon
GGTCTTGCTGGCCCTGCGGGACCCCAGGGACCTTCTGGCCTAAAG
Seq C2 exon
GGGGAGCCCGGAGAGACAGGACCACCAGGACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019081-'84-87,'84-86,85-87=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(18.0=100)
A:
PF0139113=Collagen=FE(23.0=100),PF0139113=Collagen=PU(2.8=13.3)
C2:
PF0139113=Collagen=FE(16.4=100),PF0139113=Collagen=FE(13.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGCCATGGAGACCCTG
R:
CCGTCCTGGTGGTCCTGTC
Band lengths:
68-113
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]