MmuEX6069080 @ mm9
Exon Skipping
Gene
ENSMUSG00000025650 | Col7a1
Description
collagen, type VII, alpha 1 [Source:MGI Symbol;Acc:MGI:88462]
Coordinates
chr9:108876618-108877000:+
Coord C1 exon
chr9:108876618-108876653
Coord A exon
chr9:108876809-108876853
Coord C2 exon
chr9:108876968-108877000
Length
45 bp
Sequences
Splice sites
3' ss Seq
CTTCACGCTTTTTTTCCTAGGGT
3' ss Score
9.02
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GGTAGCCATGGAGACCCTGGACCACCTGGTGCCCCG
Seq A exon
GGTCTTGCTGGCCCTGCGGGACCCCAGGGGCCTTCTGGCCTGAAG
Seq C2 exon
GGGGAGCCTGGAGAGACAGGACCTCCAGGACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025650-'85-89,'85-88,86-89=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(17.5=100)
A:
PF0139113=Collagen=FE(22.2=100),PF0139113=Collagen=PU(2.8=13.3)
C2:
PF0139113=Collagen=FE(15.9=100),PF0139113=Collagen=FE(13.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTAGCCATGGAGACCCTGG
R:
CGTCCTGGAGGTCCTGTCTC
Band lengths:
68-113
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: