DreEX6023297 @ danRer10
Exon Skipping
Gene
ENSDARG00000021720 | col7a1
Description
collagen, type VII, alpha 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2427]
Coordinates
chr6:40218999-40219273:-
Coord C1 exon
chr6:40219238-40219273
Coord A exon
chr6:40219119-40219163
Coord C2 exon
chr6:40218999-40219031
Length
45 bp
Sequences
Splice sites
3' ss Seq
CCTTTGCTTCGATTTTTCAGGGT
3' ss Score
9.92
5' ss Seq
AAGGTTAAT
5' ss Score
5.2
Exon sequences
Seq C1 exon
GGGAATCCAGGAGAACCAGGAATAAGAGGACCAACT
Seq A exon
GGTCCGATGGGTGGAAATGGACCCCCGGGGCCTCCTGGCGTGAAG
Seq C2 exon
GGTGACCATGGAGAACCAGGCATTGGAGTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000021720-'89-91,'89-90,90-91=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(13.8=100)
A:
PF0139113=Collagen=FE(17.5=100),PF0139113=Collagen=PU(17.9=93.3)
C2:
PF0139113=Collagen=PD(12.7=72.7),PF0139113=Collagen=PU(5.2=27.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAATCCAGGAGAACCAGG
R:
TGAACTCCAATGCCTGGTTCT
Band lengths:
68-113
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]