GgaEX6014981 @ galGal3
Exon Skipping
Gene
ENSGALG00000006958 | COL27A1
Description
NA
Coordinates
chr17:5390550-5391818:+
Coord C1 exon
chr17:5390550-5390603
Coord A exon
chr17:5391352-5391405
Coord C2 exon
chr17:5391765-5391818
Length
54 bp
Sequences
Splice sites
3' ss Seq
CTGTGATGCTTTCTTTCTAGGGT
3' ss Score
10.02
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
Exon sequences
Seq C1 exon
GGACCGCCTGGCCCAATGGGACAACCTGGCCTCGCAGGTGAACCTGGCATGAAG
Seq A exon
GGTGATCCTGGCCAGCTGGGAGTTCCTGGAGAGCAAGGCCTCATTGGTCAAAGA
Seq C2 exon
GGAGAAATGGGGCTGGAAGGGGACAGTGGGCCACCTGGTCCAGACGGAGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006958-'49-43,'49-42,50-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(22.7=100)
A:
PF0139113=Collagen=FE(22.7=100),PF0139113=Collagen=PU(21.5=94.4)
C2:
PF0139113=Collagen=PD(18.7=77.8),PF0139113=Collagen=FE(21.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAACCTGGCCTCGCAG
R:
CTTGGCTCCGTCTGGACCAG
Band lengths:
89-143
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]