GgaEX6016342 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr18:7950829-7952046:-
Coord C1 exon
chr18:7951877-7952046
Coord A exon
chr18:7951342-7951469
Coord C2 exon
chr18:7950829-7950966
Length
128 bp
Sequences
Splice sites
3' ss Seq
TGTTCTTGATGTTAATTCAGGAT
3' ss Score
5.3
5' ss Seq
AAGGTGAAG
5' ss Score
5.73
Exon sequences
Seq C1 exon
ATTGCTGTTCTTTGGAGTATTTATCATCCAGATGCTCATGGTTTTCTTTGGTTTTGAACTATGGAACAAATCCATCTCAGAACTGACAGCCAGCAAGTATTTTCTTCCTGCTCAGCCTCCCACTCAAACCCAAAGCAAGTCAACAAATCTTCTCATCTTCAATGACACAG
Seq A exon
GATCAGAGATAGAGGATTTCATTGCTGCTTTGAAGATTCAAAATATTATGCCAGAAATAACTCTTGAGAAAAACATCACAAGCCTGCCGCGACATAATGGAGCTATAAAGATATCCCTGGAAGGCAAG
Seq C2 exon
CACCGCCGCTACACGCTCATGTGCGGTGCAGAGCCCATCAACTGTTTCCCTGTGCTCATCAACACCCTCAGCAACACCTTCCTGAGGCTCTTCAGCTCCACCGCACGGATCCGCATCTGGAGCCATCCCTTCTCCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021393-'8-9,'8-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PU(18.1=60.3)
A:
PF126982=ABC2_membrane_3=FE(21.8=100)
C2:
PF126982=ABC2_membrane_3=FE(23.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAATCCATCTCAGAACTGACAGC
R:
TCTGGAGAAGGGATGGCTCC
Band lengths:
242-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]