MmuEX6090883 @ mm10
Exon Skipping
Gene
ENSMUSG00000044749 | Abca6
Description
ATP-binding cassette, sub-family A (ABC1), member 6 [Source:MGI Symbol;Acc:MGI:1923434]
Coordinates
chr11:110208708-110211823:-
Coord C1 exon
chr11:110211657-110211823
Coord A exon
chr11:110210085-110210218
Coord C2 exon
chr11:110208708-110208845
Length
134 bp
Sequences
Splice sites
3' ss Seq
TGCTATCAAAATCACACCAGAAT
3' ss Score
3.02
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
TCTACTGCTTCTTGGAATTGCTCTGCTCCCACTGGTCATAGAATACGTGGCTAACGCTTTGCTAGAGGTAAAAAACAACTGGGAATTTAAAACAGACTTGTATTTCCTGTCTCCTGGACAACTCCCTCAGGGTCTGCGAACCAGCCTATTGGTCATCAATAACACAG
Seq A exon
AATCAAACATTGAAGATTTCCTACAGTCACTGAAGCATCAAAACATAGTTTTGGAAGTAGATGACTTTGAAAACAGAAATGCTACCAACAGCCTTTCCTACAACGGAGCTATTATAGTTTCTGGAAGACAAAAG
Seq C2 exon
GATTACAGATTTTCAGCTGTGTGTAACACCAAGAGGCTGCACTGCTTTCCTATATTAATGAATGTTATCAGCAATGGGATCCTCCATATGCTCAACCACACACAGTATATTAGGATTAAGGAAGATATATTCTCACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044749-'23-28,'23-27,24-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(15.3=100)
A:
PF126982=ABC2_membrane_3=FE(12.1=100)
C2:
PF126982=ABC2_membrane_3=FE(12.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGAATTGCTCTGCTCCCAC
R:
TGTGTGGTTGAGCATATGGAGG
Band lengths:
258-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types