RnoEX0004906 @ rn6
Exon Skipping
Gene
ENSRNOG00000046890 | Abca6
Description
ATP binding cassette subfamily A member 6 [Source:RGD Symbol;Acc:1308998]
Coordinates
chr10:98509069-98512579:-
Coord C1 exon
chr10:98512413-98512579
Coord A exon
chr10:98510471-98510604
Coord C2 exon
chr10:98509069-98509206
Length
134 bp
Sequences
Splice sites
3' ss Seq
ATTATCAAAAATCACACTAGAGT
3' ss Score
1.82
5' ss Seq
AAGGTATGC
5' ss Score
9.55
Exon sequences
Seq C1 exon
TCTACCGCTTCTTGGAATTTCATTGATCCCACTGATTACGGAATACATGGCTAATGCTTTGATAGAGGTAAAAACCAACTGGGAATTTAAAACAGACTTGTATTTCCTGTCTCCCGGACAACTCCCTCAGGGCCTGCGAACCAGTCTATTGGTCATCAATAACACAG
Seq A exon
AGTCAAATATTGAAGATTTCGTGCAGTCGCTGAAGCATCAAAACATAGTTTTGGAAGTAGATGACTTTGAGAACAGAAACGCCACTGAGAGCCTTTCCTACAACGGAGCCATTATAGTTTCCGGAAGACAAAAG
Seq C2 exon
GACTACAGATTTTCAGCTGTGTGTAACACCAAGAGGCTACACTGCTTTCCCATATTGATGAATGTTATCAGCAATGGAATCCTTCGCATGCTCAATCATACACAGCACATCAGGCTTGAGGAAGATGTACTCTCATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046890-'25-28,'25-27,27-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(15.5=100)
A:
PF126982=ABC2_membrane_3=FE(12.2=100)
C2:
PF126982=ABC2_membrane_3=FE(12.4=100)
Main Skipping Isoform:
ENSRNOT00000073149fB313
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGAATACATGGCTAATGCT
R:
CTCAAGCCTGATGTGCTGTGT
Band lengths:
250-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]