GgaEX6017977 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr2:337137-337556:+
Coord C1 exon
chr2:337137-337183
Coord A exon
chr2:337265-337465
Coord C2 exon
chr2:337477-337556
Length
201 bp
Sequences
Splice sites
3' ss Seq
TGCCCCCACCCCATCCGCAGTGC
3' ss Score
8.69
5' ss Seq
CTGGTGGGT
5' ss Score
6.29
Exon sequences
Seq C1 exon
CACCTGCACCCAGGGGAGACTGCTGTGCACTGGGCTGCCCTGCCCCG
Seq A exon
TGCCCGGTGCCTGGTGCGAGTGGTCCCCGTGGACGCCATGCTCGAGGAGCTGCGGGGATGAGGCTGCCACGCGGCACCGTGTCTGCTCCTGCCCTGCGCCACAGCAGGGGGGGGCGGGCTGCCCTGGGGGTCTGGAGGGGCACGGGGACACCGGGATGCAGCTGCAGCACCAGGAGTGCCCCTCCGTGCCACCCTGCCCTG
Seq C2 exon
GAGAAGGGCTCTGGGGATGCTGTGCTGTGGGCACCCCGTGCTCAGTGCCCACCATCAGTGCCATTCTGGGGGTATCCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004919-'62-64,'62-63,63-64=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.029 C2=0.074
Domain overlap (PFAM):
C1:
PF053758=Pacifastin_I=FE(48.5=100)
A:
PF053758=Pacifastin_I=PD(6.1=2.9),PF0009014=TSP_1=WD(100=89.7)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]