MmuEX6004210 @ mm9
Exon Skipping
Gene
ENSMUSG00000029797 | Sspo
Description
SCO-spondin [Source:MGI Symbol;Acc:MGI:2674311]
Coordinates
chr6:48433294-48433921:+
Coord C1 exon
chr6:48433294-48433340
Coord A exon
chr6:48433441-48433632
Coord C2 exon
chr6:48433751-48433921
Length
192 bp
Sequences
Splice sites
3' ss Seq
GCCTACCCTTCTGTTCACAGTGT
3' ss Score
9.31
5' ss Seq
CAGGTGTGA
5' ss Score
5.29
Exon sequences
Seq C1 exon
CACCTGCATGGAGGGGAGGCTTAACTGCACAGACCTGCCCTGCCAAG
Seq A exon
TGTCTGGAGACTGGTGTCCGTGGTCCAAGTGGACAGCATGCTCCCAGCCCTGCAGGGGCCAAACAAGGACCCGCTCCAGGGCCTGTGTCTGCCCTGCTCCCCAGCATGGGGGTTCTCCATGTCCTGAGGAGTCAGGGGGAACAGGAGTACAGCATCAAATGGAGGCCTGCCCTAATGCCACTGCATGCCCAG
Seq C2 exon
TGGATGGAGCCTGGAGCCCTTGGGGGCCATGGTCTTCCTGTGACGCATGCCTGGGGCAGTCCTATCGAAGCCGGGTGTGCAGCCATCCTCCCATCTCTGACGGAGGCAAACCTTGTCTTGGGGGCTATCAGCAGAGTCGCCCTTGTCGGAACAGCTCCACCCTGTGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029797-'72-72,'72-71,73-72=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.062 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0009014=TSP_1=WD(100=89.2)
C2:
PF0009014=TSP_1=WD(100=87.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTGCATGGAGGGGAG
R:
CTGTACACAGGGTGGAGCTGT
Band lengths:
218-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: