RnoEX6013472 @ rn6
Exon Skipping
Gene
ENSRNOG00000025848 | Sspo
Description
SCO-spondin [Source:RGD Symbol;Acc:1549716]
Coordinates
chr4:78116397-78117026:+
Coord C1 exon
chr4:78116397-78116443
Coord A exon
chr4:78116544-78116735
Coord C2 exon
chr4:78116856-78117026
Length
192 bp
Sequences
Splice sites
3' ss Seq
GCCTACCCCACCATTCACAGTGT
3' ss Score
5.18
5' ss Seq
CAGGTGTGA
5' ss Score
5.29
Exon sequences
Seq C1 exon
CACCTGCATGGAGGGGAGACTTAACTGCACAGACCTGCCCTGCCAAG
Seq A exon
TGTCTGGAGACTGGTGTCCATGGTCAGAGTGGACAGCGTGCTCCCAGCCCTGCAGGGGCCAAACAAGGACCCGCTCCAGGGCCTGTGTCTGTCCTGCTCCCCAGCATGGGGGTGCCCCATGCCCTGAGGAGGCAGGGGAAACAGGAGTGCAGCATCAAATGGAGGCCTGCCCTAACCCCACTGCATGCCCAG
Seq C2 exon
TGGATGGGGCCTGGAGCCCTTGGGGGTCATGGTCTCCCTGTGATGCATGCCTGGGGCAGTCCTATCGGAGCCGGATGTGCAGCCATCCTCCTCCCTCTGATGGAGGCACACCTTGTCTTGGGGGCCATCAGCAGAGTCGTCCTTGTCGGAACAGCTCCACCCCTTGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025848-'73-77,'73-76,74-77=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.092 C2=0.017
Domain overlap (PFAM):
C1:
PF053758=Pacifastin_I=FE(47.1=100)
A:
PF053758=Pacifastin_I=PD(8.8=4.6),PF0009014=TSP_1=WD(100=89.2)
C2:
PF0009014=TSP_1=WD(100=87.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTGCATGGAGGGGAGA
R:
CTGTACAAGGGGTGGAGCTGT
Band lengths:
218-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]