BtaEX6029383 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008542 | SSPO
Description
SCO-spondin [Source:HGNC Symbol;Acc:HGNC:21998]
Coordinates
chr4:113473691-113474304:+
Coord C1 exon
chr4:113473691-113473737
Coord A exon
chr4:113473850-113474041
Coord C2 exon
chr4:113474134-113474304
Length
192 bp
Sequences
Splice sites
3' ss Seq
CTCACCATTCACCCCCACAGTGC
3' ss Score
7.69
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
CACCTGCTCCGAGGGCCAGCTCACTTGCACAGACCTGCCTTGCCCAG
Seq A exon
TGCCTGGCGCCTGGTGCCCGTGGTCAGAGTGGACAGCGTGCTCCCAGCCCTGCCAGGGACAGACGAGGACCCGCTCCAGGGCCTGCAGCTGCCCGGCTCCACAGCATGGCGGGGCCCCATGCCCCGGGGAGGCAGGGGAGGCGGGGGCCCAGCATCAGAGGGAGACCTGTGCCAGCACCCCCGAGTGCCCAG
Seq C2 exon
TGGATGGAGCCTGGAGCCCGTGGGGACCGTGGTCTCCCTGTGACGTGTGCCTGGGGCAGTCCCATCGCAGCCGAGAGTGTAGCTGGCCCCCCACCTCTGAGGGAGGCCGGCCCTGCCCTGGGGGCCACAGGCAGAGTCGCCCCTGCCAGGGCAATTCCACTCAGTGCACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008542-'83-81,'83-80,84-81=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.092 C2=0.034
Domain overlap (PFAM):
C1:
PF053758=Pacifastin_I=FE(50.0=100)
A:
PF053758=Pacifastin_I=PD(6.2=3.1),PF0009014=TSP_1=WD(100=89.2)
C2:
PF0009014=TSP_1=WD(100=87.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAGGGCCAGCTCACTT
R:
CCGTGCACTGAGTGGAATTGC
Band lengths:
210-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]