DreEX6096588 @ danRer10
Exon Skipping
Gene
ENSDARG00000067859 | scospondin
Description
subcommissural organ spondin [Source:ZFIN;Acc:ZDB-GENE-051114-1]
Coordinates
chr24:40227497-40231102:+
Coord C1 exon
chr24:40227497-40227543
Coord A exon
chr24:40229417-40229617
Coord C2 exon
chr24:40230932-40231102
Length
201 bp
Sequences
Splice sites
3' ss Seq
ATTTAAATATGTGTCCTCAGTGG
3' ss Score
6.6
5' ss Seq
CCGGTGAGA
5' ss Score
8.72
Exon sequences
Seq C1 exon
CACATGTGAAGGAGGCAGACTGTCCTGCACTGATCATCCATGTCCAG
Seq A exon
TGGATGGAGACTGGTGTCAGTGGTCTGCCTGGACACCCTGCTCTAAGACCTGTGGGCTGGAGTGGGTGTCACGCTACAGGAGCTGCTCCTGTCCCGAACCCATGTCTGGAGGAGCTCCCTGTGCAGACCAGCAGGAGGAGCACGCCGGGCTGGGGGTCCAGATCCAGAGACAGCCCTGCCCATCCATCTCCTACTGTCCCG
Seq C2 exon
TTGACGGTTCGTGGGGCTCCTGGAGCTCGTGGTCAGAGTGTGACGCATGCGCGGGTGTCTCAGTCAGACAGAGGCAGTGTCACAGTCCTCCAGCGCGCTTTGGAGGTCTGCCCTGCATGGGGGAGAGTCTGCAGAGTCGCGCGTGTCATGATAACACCACCGTCTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000067859-'71-76,'71-75,72-76=AN
Average complexity
A_S
Mappability confidence:
88%=75=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.015 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0009014=TSP_1=WD(100=89.7)
C2:
PF0009014=TSP_1=PU(86.7=89.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGGAGGCAGACTGTCCTG
R:
CTGAGCAGACGGTGGTGTTAT
Band lengths:
212-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]