HsaEX0061887 @ hg19
Exon Skipping
Gene
ENSG00000197558 | SSPO
Description
SCO-spondin homolog (Bos taurus) [Source:HGNC Symbol;Acc:21998]
Coordinates
chr7:149511422-149512032:+
Coord C1 exon
chr7:149511422-149511468
Coord A exon
chr7:149511560-149511751
Coord C2 exon
chr7:149511862-149512032
Length
192 bp
Sequences
Splice sites
3' ss Seq
GCCCACCATTCTCCTTGTAGTGC
3' ss Score
8.06
5' ss Seq
CAGGTGTAA
5' ss Score
1.3
Exon sequences
Seq C1 exon
CACCTGCCTGGAGGGGAGGCTGAACTGCACAGACCTGCCCTGCCCAG
Seq A exon
TGCCCGGAGGCTGGTGCCCGTGGTCGGAGTGGACAATGTGCTCCCAGCCCTGCAGGGGCCAGACCAGGAGCCGCTCCAGGGCCTGTGCCTGCCCCACTCCTCAGCACGGTGGTGCCCCGTGCACTGGAGAGGCTGGGGAGGCAGGGGCCCAGCATCAGAGGGAGGCCTGCCCCAGCTACGCCACGTGCCCAG
Seq C2 exon
TGGACGGAGCCTGGGGCCCATGGGGGCCATGGTCTCCCTGCGACATGTGCTTGGGGCAGTCCCACCGGAGCCGGGCGTGCAGCCGGCCCCCCACCCCTGAGGGAGGGAGGCCCTGCCCTGGGAACCACACGCAGAGTCGCCCTTGCCAGGAAAATTCCACCCAGTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197558-'84-84,'84-83,85-84
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.077 C2=0.035
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGGGGAGGCTGAACTG
R:
TGTGCACTGGGTGGAATTTTC
Band lengths:
210-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)