GgaEX6017979 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr2:336686-337183:+
Coord C1 exon
chr2:336686-336765
Coord A exon
chr2:336847-337016
Coord C2 exon
chr2:337137-337183
Length
170 bp
Sequences
Splice sites
3' ss Seq
GGGTGGTGTCCCCATGGCAGCAC
3' ss Score
4.16
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
CTCCCGACTGTGCCGCAGTGCCAGGGTCGGTGTTCAGCCACTGCGGGCCCCCCTGTCCCCGCTCCTGCGATGACATCTCG
Seq A exon
CACTGCGTATGGCACTGCCAGCCTGGCTGTTACTGCACCAACGGCACGCTGCTGGATGCAACGGGCACGGCGTGCGTGGCCCTGGAGAACTGCACCTGCCTGGATGCGCACAGCGGGCAGCGGCATCAGCCCGGGCAGAGCGTGCCACGTGGCGATGGCTGCAACAACTG
Seq C2 exon
CACCTGCACCCAGGGGAGACTGCTGTGCACTGGGCTGCCCTGCCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004919-'60-62,'60-61,61-62=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=PU(41.8=85.2)
A:
PF0182612=TIL=PD(54.5=52.6),PF053758=Pacifastin_I=PU(42.4=24.6)
C2:
PF053758=Pacifastin_I=FE(48.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGCCAGGGTCGGTGTT
R:
CCCAGTGCACAGCAGTCTC
Band lengths:
98-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]