HsaEX6011184 @ hg19
Exon Skipping
Gene
ENSG00000197558 | SSPO
Description
SCO-spondin homolog (Bos taurus) [Source:HGNC Symbol;Acc:21998]
Coordinates
chr7:149509649-149511468:+
Coord C1 exon
chr7:149509649-149509728
Coord A exon
chr7:149510718-149510887
Coord C2 exon
chr7:149511422-149511468
Length
170 bp
Sequences
Splice sites
3' ss Seq
CCCCACTTACTGTCCCCCAGCAC
3' ss Score
6.52
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
Exon sequences
Seq C1 exon
TGACCAACTGCACTGCCATTGAAGGGGCCGAGTATAGCCCCTGTGGCCCTCCGTGCCCTCGCTCCTGTGATGACCTAGTG
Seq A exon
CACTGCGTGTGGCGCTGCCAGCCTGGCTGCTACTGCCCACCAGGCCAGGTACTGAGTTCCAACGGGGCCATCTGCGTGCAGCCGGGTCACTGCAGCTGCCTGGACCTGCTGACCGGGCAGCGGCACCATCCGGGTGCTCGGCTGGCAAGGCCTGACGGCTGCAACCACTG
Seq C2 exon
CACCTGCCTGGAGGGGAGGCTGAACTGCACAGACCTGCCCTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197558-'82-82,'82-80,83-82=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCAACTGCACTGCCATTG
R:
CAGGGCAGGTCTGTGCAGTT
Band lengths:
122-292
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)