MmuEX0045067 @ mm9
Exon Skipping
Gene
ENSMUSG00000029797 | Sspo
Description
SCO-spondin [Source:MGI Symbol;Acc:MGI:2674311]
Coordinates
chr6:48431236-48433340:+
Coord C1 exon
chr6:48431236-48431315
Coord A exon
chr6:48432653-48432822
Coord C2 exon
chr6:48433294-48433340
Length
170 bp
Sequences
Splice sites
3' ss Seq
CTCTCTGTCCATCCCTCCAGCAC
3' ss Score
10.49
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
Exon sequences
Seq C1 exon
TGACCAACTGCAGTGCCATGGAAGGGGCAGAGTACAGCCCCTGTGGCCCTCCTTGTCCCCGCTCCTGTGATGACCTTGTG
Seq A exon
CACTGTGTGTGGCGCTGCCAACCAGGCTGCTACTGTCCCCTGGGCAAGGTACTGAGTGCTGATGGGGCCATCTGTGTGAAGCCCAGTTACTGCAGCTGCCTGGACCTGCTGACTGGAAAGCGCCACCATGCAGGCACTCAGCTGATGAGGCCAGATGGTTGTAACCACTG
Seq C2 exon
CACCTGCATGGAGGGGAGGCTTAACTGCACAGACCTGCCCTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029797_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=PU(41.8=85.2)
A:
PF0182612=TIL=PD(54.5=52.6)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCAACTGCAGTGCCATG
R:
CAGGGCAGGTCTGTGCAGTTA
Band lengths:
122-292
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: