HsaEX6011184 @ hg38
Exon Skipping
Gene
ENSG00000197558 | SSPO
Description
SCO-spondin [Source:HGNC Symbol;Acc:HGNC:21998]
Coordinates
chr7:149812561-149814380:+
Coord C1 exon
chr7:149812561-149812640
Coord A exon
chr7:149813630-149813799
Coord C2 exon
chr7:149814334-149814380
Length
170 bp
Sequences
Splice sites
3' ss Seq
CCCCACTTACTGTCCCCCAGCAC
3' ss Score
6.52
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
Exon sequences
Seq C1 exon
TGACCAACTGCACTGCCATTGAAGGGGCCGAGTATAGCCCCTGTGGCCCTCCGTGCCCTCGCTCCTGTGATGACCTAGTG
Seq A exon
CACTGCGTGTGGCGCTGCCAGCCTGGCTGCTACTGCCCACCAGGCCAGGTACTGAGTTCCAACGGGGCCATCTGCGTGCAGCCGGGTCACTGCAGCTGCCTGGACCTGCTGACCGGGCAGCGGCACCATCCGGGTGCTCGGCTGGCAAGGCCTGACGGCTGCAACCACTG
Seq C2 exon
CACCTGCCTGGAGGGGAGGCTGAACTGCACAGACCTGCCCTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197558-'89-101,'89-100,90-101=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCAACTGCACTGCCATTG
R:
CAGGGCAGGTCTGTGCAGTT
Band lengths:
122-292
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains