RnoEX6013474 @ rn6
Exon Skipping
Gene
ENSRNOG00000025848 | Sspo
Description
SCO-spondin [Source:RGD Symbol;Acc:1549716]
Coordinates
chr4:78114232-78116443:+
Coord C1 exon
chr4:78114232-78114311
Coord A exon
chr4:78115723-78115892
Coord C2 exon
chr4:78116397-78116443
Length
170 bp
Sequences
Splice sites
3' ss Seq
CTCTCTGTTCACCCCTGCAGCAC
3' ss Score
10.24
5' ss Seq
TTGGTGAGA
5' ss Score
6.29
Exon sequences
Seq C1 exon
TGGCCAACTGCAGTACCATTGAAGGGGCGGAGTACAGCCCCTGTGGCCCTCCCTGTCCCCGTTCCTGTGATGACCTTGTG
Seq A exon
CACTGCATGTGGCACTGCCAGCCAGGCTGCTATTGTCCCCCGGGCAAGGTGCTGAGTGCTGATGGGGCCATCTGCGTGCAGCCCCATCACTGCAGCTGCCTGGACCTGCTGACCGGGAAGCGCCACCACCCAGGCAGTCAGCTGATGAGGCCTGATGGCTGTAACCATTG
Seq C2 exon
CACCTGCATGGAGGGGAGACTTAACTGCACAGACCTGCCCTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025848-'71-75,'71-74,72-75=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=PU(41.8=85.2)
A:
PF0182612=TIL=PD(54.5=52.6),PF053758=Pacifastin_I=PU(41.2=24.6)
C2:
PF053758=Pacifastin_I=FE(47.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCAACTGCAGTACCATTG
R:
CAGGGCAGGTCTGTGCAGTTA
Band lengths:
122-292
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]