MmuEX0045066 @ mm9
Exon Skipping
Gene
ENSMUSG00000029797 | Sspo
Description
SCO-spondin [Source:MGI Symbol;Acc:MGI:2674311]
Coordinates
chr6:48430958-48432822:+
Coord C1 exon
chr6:48430958-48431128
Coord A exon
chr6:48431236-48431315
Coord C2 exon
chr6:48432653-48432822
Length
80 bp
Sequences
Splice sites
3' ss Seq
AGACCACTCTGCCCTCCCAGTGA
3' ss Score
5.42
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
AAGCAGGGGGCTGGAGTCCTTGGAGCCCCTGGTCTGGCTGTAGTCGGAGCTGTGGAGGAGGCCTGCGGAGCCGGACCCGAGCCTGTGACCAGCCGTCACCCCAGGGCCTGGGGGATTTTTGTGAGGGACCTCAGGCCCAGGGGGAGGCCTGCCAGGCTCAGCCATGCCCAG
Seq A exon
TGACCAACTGCAGTGCCATGGAAGGGGCAGAGTACAGCCCCTGTGGCCCTCCTTGTCCCCGCTCCTGTGATGACCTTGTG
Seq C2 exon
CACTGTGTGTGGCGCTGCCAACCAGGCTGCTACTGTCCCCTGGGCAAGGTACTGAGTGCTGATGGGGCCATCTGTGTGAAGCCCAGTTACTGCAGCTGCCTGGACCTGCTGACTGGAAAGCGCCACCATGCAGGCACTCAGCTGATGAGGCCAGATGGTTGTAACCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029797_MULTIEX2-1/2=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=WD(100=87.9)
A:
PF0182612=TIL=PU(41.8=85.2)
C2:
PF0182612=TIL=PD(54.5=52.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGGATTTTTGTGAGGGACC
R:
CTTTCCAGTCAGCAGGTCCAG
Band lengths:
182-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: