RnoEX6013475 @ rn6
Exon Skipping
Gene
ENSRNOG00000025848 | Sspo
Description
SCO-spondin [Source:RGD Symbol;Acc:1549716]
Coordinates
chr4:78113956-78115892:+
Coord C1 exon
chr4:78113956-78114126
Coord A exon
chr4:78114232-78114311
Coord C2 exon
chr4:78115723-78115892
Length
80 bp
Sequences
Splice sites
3' ss Seq
AGTTCATTCTGTCCTCCCAGTGG
3' ss Score
6.95
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
AAGCAGGGGTCTGGGGTCCTTGGAGTCCCTGGTCTGGCTGTAGTCGGAGCTGTGGAGGAGGCCTGCGGAGCCGGACCCGGGCTTGTGACAAGCCACCACCCCAGGGCCTGGGGGATTTCTGTGAGGGACCTCAGGCCCAGGGGGAGGCCTGCCAGGCCCAACCGTGCCCAG
Seq A exon
TGGCCAACTGCAGTACCATTGAAGGGGCGGAGTACAGCCCCTGTGGCCCTCCCTGTCCCCGTTCCTGTGATGACCTTGTG
Seq C2 exon
CACTGCATGTGGCACTGCCAGCCAGGCTGCTATTGTCCCCCGGGCAAGGTGCTGAGTGCTGATGGGGCCATCTGCGTGCAGCCCCATCACTGCAGCTGCCTGGACCTGCTGACCGGGAAGCGCCACCACCCAGGCAGTCAGCTGATGAGGCCTGATGGCTGTAACCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025848-'70-74,'70-73,71-74=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=WD(100=87.9)
A:
PF0182612=TIL=PU(41.8=85.2)
C2:
PF0182612=TIL=PD(54.5=52.6),PF053758=Pacifastin_I=PU(41.2=24.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGGGATTTCTGTGAGGGA
R:
CCAGGCAGCTGCAGTGATG
Band lengths:
167-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]