GgaEX7001534 @ galGal4
Exon Skipping
Gene
ENSGALG00000004919 | SSPO
Description
SCO-spondin [Source:HGNC Symbol;Acc:HGNC:21998]
Coordinates
chr2:429558-430134:+
Coord C1 exon
chr2:429558-429716
Coord A exon
chr2:429804-429883
Coord C2 exon
chr2:429965-430134
Length
80 bp
Sequences
Splice sites
3' ss Seq
GACGGCCCATTCCCCCACAGCTC
3' ss Score
9.19
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
Exon sequences
Seq C1 exon
TGGATGGGCCCTGGACCCCATGGACCCCCTGGAGTGAGTGCTCAGCCTCCTGCGGGCCGGGCCGCCAGCGCCGGTACCGCTTCTGCTCTGCACATCCCGGGGTGCCCTGCGCAGAGCCACAGCCTCAGGAGCGTCCCTGCGCCCGGCAGCCCTGCCACC
Seq A exon
CTCCCGACTGTGCCGCAGTGCCAGGGTCGGTGTTCAGCCACTGCGGGCCCCCCTGTCCCCGCTCCTGCGATGACATCTCG
Seq C2 exon
CACTGCGTATGGCACTGCCAGCCTGGCTGTTACTGCACCAACGGCACGCTGCTGGATGCAACGGGCACGGCGTGCGTGGCCCTGGAGAACTGCACCTGCCTGGATGCGCACAGCGGGCAGCGGCATCAGCCCGGGCAGAGCGTGCCACGTGGCGATGGCTGCAACAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004919-'67-66,'67-65,68-66=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.035
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=WD(100=87.0)
A:
PF0182612=TIL=PU(41.8=85.2)
C2:
PF0182612=TIL=PD(54.5=52.6),PF053758=Pacifastin_I=PU(42.4=24.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGAGTGCTCAGCCTCCT
R:
GTTGGTGCAGTAACAGCCAGG
Band lengths:
170-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]