BtaEX6029386 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008542 | SSPO
Description
SCO-spondin [Source:HGNC Symbol;Acc:HGNC:21998]
Coordinates
chr4:113471590-113473164:+
Coord C1 exon
chr4:113471590-113471760
Coord A exon
chr4:113471924-113472003
Coord C2 exon
chr4:113472995-113473164
Length
80 bp
Sequences
Splice sites
3' ss Seq
CCACCCCACCCACTCCGCAGTGA
3' ss Score
6.96
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
GAGCTGGAGGCTGGGGCCCTTGGGGACCCTGGTCCAGCTGTAGCCGGAGCTGTGGAGGGGGTCTCCGGAGCCGGAGCCGAGCCTGTGATCAGCCCCCACCCCAGGGCCTGGGGGATTACTGCGAGGGGCCTCGGGCCCAGGGGGCGGCCTGCCAGGCTCTGCCATGCCCAG
Seq A exon
TGACCAACTGCACCGCCATCGAAGGGGCGGAGTACAGCGCCTGTGGCCCTCCCTGCCCTCGCTCCTGCGATGACCTCGTG
Seq C2 exon
CACTGCGTTTGGCACTGCCAGCCCGGCTGTTACTGCCCCCCAGGCCAGGTGCTGAGTGCCGACGGCACCGTCTGCGTGCAGCCCGGTCACTGCAGCTGCCTGGACCTGCTGACTGGGGAGCGGCACCGTCCAGGGGCCCAGCTGGCCAAGCCTGACGGCTGCAACTACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008542-'79-78,'79-77,80-78=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=WD(100=87.9)
A:
PF0182612=TIL=PU(41.8=85.2)
C2:
PF0182612=TIL=PD(54.5=52.6),PF053758=Pacifastin_I=PU(40.6=22.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGGGATTACTGCGAGGG
R:
AGTCAGCAGGTCCAGGCAG
Band lengths:
178-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]