GgaEX6018279 @ galGal3
Exon Skipping
Gene
ENSGALG00000006033 | GORASP1
Description
NA
Coordinates
chr2:5190726-5192298:+
Coord C1 exon
chr2:5190726-5190840
Coord A exon
chr2:5191212-5191292
Coord C2 exon
chr2:5192095-5192298
Length
81 bp
Sequences
Splice sites
3' ss Seq
TATATGTGTATGTTTTTCAGGTT
3' ss Score
9.95
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GGACGCCGGGACGATGCTGCTCGGCGCCGCCGCTTGAGCCGCGTTGCCAGGCATGGGGCTGGGCTCGAGCTCCGAGCTCCCGGACGGCGGCGCCGAGGGCTTCCACGTACACGGG
Seq A exon
GTTCAGGAGAACTCCCCCGCTCAGCAAGGAGGGCTGGAGCCTTTCTTTGACTTCATCATTGCGATAGGACACACCAGGCTG
Seq C2 exon
AATAAAGAAAACAATATGTTGAAAGATCTACTGAAGGCAAATGCTGAAAAAGCAGTGAAACTGGAGGTGTATAACATCAAAACAATGAAGATAAGAGAGGTGGAGGTGGTCCCCAGTAACATGTGGGGAGGACAAGGTCTTCTCGGAGCCAGCGTGAGGTTCTGCAGTTTCCAGGGAGCCAATGAACACGTGTGGCATGTTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006033-'1-3,'1-0,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=0.148 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF044959=GRASP55_65=PU(34.3=69.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGGCTTCCACGTACACG
R:
TCCGAGAAGACCTTGTCCTCC
Band lengths:
168-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]