HsaEX0028057 @ hg19
Exon Skipping
Gene
ENSG00000114745 | GORASP1
Description
golgi reassembly stacking protein 1, 65kDa [Source:HGNC Symbol;Acc:16769]
Coordinates
chr3:39142507-39149854:-
Coord C1 exon
chr3:39148970-39149854
Coord A exon
chr3:39144964-39145044
Coord C2 exon
chr3:39142507-39142593
Length
81 bp
Sequences
Splice sites
3' ss Seq
TGGTCTTTGCTGTGGGATAGGTG
3' ss Score
7.04
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GCCTGATATAACTGAGGACAGCGAAGGGTGGCAGGAGAGTAGCAGGGCAGACGGTCTCTGGGTCAGGGGCGGGGAGTCACGAGGGAGCCCTCGGACAGCGCCCGGGCCACGCACCATAAGGGAGGAGTCATTGCTGCTCATCTCGGGCCGCTCGCGGCTCCGAGTCCGGGTCTGGTGGGGCGGTGCAGAGCGGGATTCCCGAGGCAGGGTCGTGGGCACTCTATCGCGGCGGGCGGTTGAAGGCGTTACAGTCCTTGGAAACCGAGCTGCTAGCCGGTTGCTAGGAGCGTCCAGTGTCTGGAGTGGGAGGAACAAAACGCCTCACGTCACAAGGCGCAGGAATCGAGCGCCGAGAGAGCGAGTCGGTGCTACTGGCGTCGGGTCGGTCCGGGTAGGCGCAGCGGGACTGGACCTGGGTGCCGAGCGGAGCCGCTGCCATGGGCCTGGGCGTCAGCGCTGAGCAGCCCGCAGGCGGCGCCGAGGGCTTCCACCTCCACGGG
Seq A exon
GTGCAGGAGAACTCCCCAGCCCAGCAGGCGGGCCTGGAGCCCTACTTTGACTTCATCATCACCATTGGGCACTCGAGGCTG
Seq C2 exon
GATGTGGAACCATCTTCACCTGCTGCCCTTGCCGGCCTGCGCCCCTACACAGACTATGTGGTTGGTTCGGACCAGATTCTCCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000114745_MULTIEX2-1/3=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.550 A=0.109 C2=0.156
Domain overlap (PFAM):
C1:
PF044959=GRASP55_65=PU(18.7=95.2)
A:
PF044959=GRASP55_65=FE(27.3=100)
C2:
PF044959=GRASP55_65=FE(20.4=100)
Other Inclusion Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGAGCGAGTCGGTGCTA
R:
GCAGGTGAAGATGGTTCCACA
Band lengths:
172-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)