HsaEX0028058 @ hg19
Exon Skipping
Gene
ENSG00000114745 | GORASP1
Description
golgi reassembly stacking protein 1, 65kDa [Source:HGNC Symbol;Acc:16769]
Coordinates
chr3:39142507-39149854:-
Coord C1 exon
chr3:39148970-39149854
Coord A exon
chr3:39144169-39144372
Coord C2 exon
chr3:39142507-39142593
Length
204 bp
Sequences
Splice sites
3' ss Seq
CAGCCCCATTGCCCCCACAGAAC
3' ss Score
7.79
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GCCTGATATAACTGAGGACAGCGAAGGGTGGCAGGAGAGTAGCAGGGCAGACGGTCTCTGGGTCAGGGGCGGGGAGTCACGAGGGAGCCCTCGGACAGCGCCCGGGCCACGCACCATAAGGGAGGAGTCATTGCTGCTCATCTCGGGCCGCTCGCGGCTCCGAGTCCGGGTCTGGTGGGGCGGTGCAGAGCGGGATTCCCGAGGCAGGGTCGTGGGCACTCTATCGCGGCGGGCGGTTGAAGGCGTTACAGTCCTTGGAAACCGAGCTGCTAGCCGGTTGCTAGGAGCGTCCAGTGTCTGGAGTGGGAGGAACAAAACGCCTCACGTCACAAGGCGCAGGAATCGAGCGCCGAGAGAGCGAGTCGGTGCTACTGGCGTCGGGTCGGTCCGGGTAGGCGCAGCGGGACTGGACCTGGGTGCCGAGCGGAGCCGCTGCCATGGGCCTGGGCGTCAGCGCTGAGCAGCCCGCAGGCGGCGCCGAGGGCTTCCACCTCCACGGG
Seq A exon
AACAAGGAGAATGACACCCTGAAGGCACTACTGAAAGCCAATGTGGAGAAGCCCGTGAAGCTGGAGGTGTTCAATATGAAGACCATGAGGGTGCGCGAGGTGGAGGTGGTGCCCAGCAACATGTGGGGCGGCCAGGGCCTACTGGGTGCCAGTGTGCGCTTCTGCAGCTTCCGCAGGGCCAGTGAGCAGGTGTGGCATGTGCTG
Seq C2 exon
GATGTGGAACCATCTTCACCTGCTGCCCTTGCCGGCCTGCGCCCCTACACAGACTATGTGGTTGGTTCGGACCAGATTCTCCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000114745_MULTIEX2-2/3=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.550 A=0.000 C2=0.156
Domain overlap (PFAM):
C1:
PF044959=GRASP55_65=PU(18.7=95.2)
A:
PF044959=GRASP55_65=PD(54.2=92.1)
C2:
PF044959=GRASP55_65=FE(20.4=100)
Other Inclusion Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGTCTGGAGTGGGAGGAA
R:
CTCCTGGAGAATCTGGTCCGA
Band lengths:
296-500
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)