GgaEX1027013 @ galGal3
Exon Skipping
Gene
ENSGALG00000006033 | GORASP1
Description
NA
Coordinates
chr2:5191212-5193446:+
Coord C1 exon
chr2:5191212-5191292
Coord A exon
chr2:5192095-5192298
Coord C2 exon
chr2:5193360-5193446
Length
204 bp
Sequences
Splice sites
3' ss Seq
TGTCTTTCTGCACTCTGTAGAAT
3' ss Score
8.23
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
GTTCAGGAGAACTCCCCCGCTCAGCAAGGAGGGCTGGAGCCTTTCTTTGACTTCATCATTGCGATAGGACACACCAGGCTG
Seq A exon
AATAAAGAAAACAATATGTTGAAAGATCTACTGAAGGCAAATGCTGAAAAAGCAGTGAAACTGGAGGTGTATAACATCAAAACAATGAAGATAAGAGAGGTGGAGGTGGTCCCCAGTAACATGTGGGGAGGACAAGGTCTTCTCGGAGCCAGCGTGAGGTTCTGCAGTTTCCAGGGAGCCAATGAACACGTGTGGCATGTTTTG
Seq C2 exon
GATGTTGAACCCGCATCTCCTGCAGCTGTAGGTGGATTGCAGCCATACACTGACTACATTGTTGGATCTGATCAGATTCTGCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006033-'3-8,'3-3,4-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.148 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF044959=GRASP55_65=PU(34.3=69.1)
C2:
PF044959=GRASP55_65=FE(20.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAACTCCCCCGCTCAG
R:
CCTGCAGAATCTGATCAGATCCA
Band lengths:
161-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]