DreEX0004774 @ danRer10
Exon Skipping
Gene
ENSDARG00000101928 | GORASP1 (2 of 2)
Description
golgi reassembly stacking protein 1, 65kDa [Source:HGNC Symbol;Acc:HGNC:16769]
Coordinates
chr24:41162128-41163178:+
Coord C1 exon
chr24:41162128-41162208
Coord A exon
chr24:41162395-41162598
Coord C2 exon
chr24:41163092-41163178
Length
204 bp
Sequences
Splice sites
3' ss Seq
TAGTGTGTGCTTGTGCTCAGAAT
3' ss Score
5.16
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GTTCAGGAGAATTCTCCAGCAGAGAGAGCCGGTCTGGAGCCCTTCTTTGACTTCATTCTGTCAATTGGACACACCAGACTG
Seq A exon
AATAAAGAGAGCAGCACGCTGAAGGAGCTCCTGAAGGCTAATGTGGAGAAGCCGGTGAAGCTGCAGGTTTACAGCAGTAAAGTGATGAGGGTTCGAGAGCTGGAGCTGGTTCCCAGTAACCTGTGGGGCGGTCAGGGGCTCCTGGGGGCCAGTGTTCGCTTCTGCAGCTTCACCGGGGCCGATCAATACGTCTGGCACGTGCTG
Seq C2 exon
GATGTGGAAGTGAATTCTCCGGCTGAACTGGCGGGACTGAAGCCTTATTCGGACTATATCATTGGTGCCGATCAGGTTCTACAGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101928-'2-3,'2-2,3-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF044959=GRASP55_65=PU(34.3=68.1)
C2:
PF044959=GRASP55_65=FE(21.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGAGAGCCGGTCTGGAG
R:
TCCTGTAGAACCTGATCGGCA
Band lengths:
148-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]