HsaEX0028058 @ hg38
Exon Skipping
Gene
ENSG00000114745 | GORASP1
Description
golgi reassembly stacking protein 1 [Source:HGNC Symbol;Acc:HGNC:16769]
Coordinates
chr3:39101016-39108363:-
Coord C1 exon
chr3:39107479-39108363
Coord A exon
chr3:39102678-39102881
Coord C2 exon
chr3:39101016-39101102
Length
204 bp
Sequences
Splice sites
3' ss Seq
CAGCCCCATTGCCCCCACAGAAC
3' ss Score
7.79
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GCCTGATATAACTGAGGACAGCGAAGGGTGGCAGGAGAGTAGCAGGGCAGACGGTCTCTGGGTCAGGGGCGGGGAGTCACGAGGGAGCCCTCGGACAGCGCCCGGGCCACGCACCATAAGGGAGGAGTCATTGCTGCTCATCTCGGGCCGCTCGCGGCTCCGAGTCCGGGTCTGGTGGGGCGGTGCAGAGCGGGATTCCCGAGGCAGGGTCGTGGGCACTCTATCGCGGCGGGCGGTTGAAGGCGTTACAGTCCTTGGAAACCGAGCTGCTAGCCGGTTGCTAGGAGCGTCCAGTGTCTGGAGTGGGAGGAACAAAACGCCTCACGTCACAAGGCGCAGGAATCGAGCGCCGAGAGAGCGAGTCGGTGCTACTGGCGTCGGGTCGGTCCGGGTAGGCGCAGCGGGACTGGACCTGGGTGCCGAGCGGAGCCGCTGCCATGGGCCTGGGCGTCAGCGCTGAGCAGCCCGCAGGCGGCGCCGAGGGCTTCCACCTCCACGGG
Seq A exon
AACAAGGAGAATGACACCCTGAAGGCACTACTGAAAGCCAATGTGGAGAAGCCCGTGAAGCTGGAGGTGTTCAATATGAAGACCATGAGGGTGCGCGAGGTGGAGGTGGTGCCCAGCAACATGTGGGGCGGCCAGGGCCTACTGGGTGCCAGTGTGCGCTTCTGCAGCTTCCGCAGGGCCAGTGAGCAGGTGTGGCATGTGCTG
Seq C2 exon
GATGTGGAACCATCTTCACCTGCTGCCCTTGCCGGCCTGCGCCCCTACACAGACTATGTGGTTGGTTCGGACCAGATTCTCCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000114745_MULTIEX1-2/3=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.512 A=0.000 C2=0.145
Domain overlap (PFAM):
C1:
PF044959=GRASP55_65=PU(35.1=95.2)
A:
PF044959=GRASP55_65=PU(34.3=69.1)
C2:
PF044959=GRASP55_65=FE(20.4=100)
Other Inclusion Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGTCTGGAGTGGGAGGAA
R:
CTCCTGGAGAATCTGGTCCGA
Band lengths:
296-500
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development